Ravindra Garde-Postdoctoral Researcher
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Experience
Postdoctoral Researcher
Helmholtz Institute for Infection Research
- Developed an agent based model to elucidate the dose-uptake discrepancy of antibiotics in bacteria
- Fostered collaboration with microbiologists to develop a data driven framework for antibiotic dosing
Staff Scientist
Institute for Drug Discovery, University of Leipzig
- Pursued DFG Walter Benjamin fellowship, showcasing initiative and dedication to professional growth while contributing to high-impact research initiatives
- Developed a pipeline for metadynamics MD simulation using collective variables to describe the opening of an anion channel
- Docked a potential therapeutic to the study protein
- Mastered vHTS and enhanced sampling MD simulations with PLUMED within 3 months, optimizing workflows for protein informatics projects
- Participated in collaborative side projects to model structure of TLR4 bound to a protein using AlphaFold2 multimer
- Contributed to RosettaCon by sharing insights on computational frameworks, strengthening professional networks and promoting innovative solutions in structural biology
Staff Scientist
Matthias Schleiden Institute of Genetics, Friedrich-Schiller University
- Transcriptome analysis of Sorghum bicolor infected by two formae speciales of Sporisorium reilianum
- Facilitated the completion of a long stagnant project successfully
- Helped a PhD student in the analysis of maize transcriptome data
PhD Candidate
Max Planck Institute for Chemical Ecology, Friedrich-Schiller University
- Successfully applied a minimal model to describe biofilm growth oscillations, and made further developments to the model
- Forged collaboration within the research group and contributed to a comprehensive review article modelling host-pathogen interactions
- Critical project, data, and performance assessment resulting in the publication in international peer reviewed open access scientific journals
- Communicating science through oral and poster presentations at conferences
- Managed and supervised practical course in metabolic and regulatory networks to master students every summer semester between 2018-2020
- Supervised applicants of the IMPRS PhD recruitment in the years 2017 and 2018
Industry Experience
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Experienced in Biotechnology, Education, Healthcare, and Pharmaceutical.
Business Area Experience
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Experienced in Research and Development.
Skills
- Highly Skilled Computational Biologist With Advanced Competencies In Molecular Dynamics Simulations, Ngs Data Analysis, Systems Biology And Virtual High Throughput Screening
- Solid Experience And Passion In Structure Based Modeling Of Macromolecules
- Passionate About Clinical Applications Of Computational Methods
- Experienced In Goal-Oriented Project Development Within A Team Or Independently
- Flexible And Adaptable Professional Thriving In A Multicultural Environment
- Enthusiastic In Communicating Science To Multifaceted Audiences (E.G. Customers & Scientists) Verbally And In Writing
- Md Simulations: Metadynamics, Targeted Md, All Atom Md, Qm/Mm
- Molecular Modelling: Alphafold, Rosetta, Amber, Gromacs, Plumed, Discovery Studios, Pymol, Schroedinger Suite
- Programming: Perl, Python, R, Bash
- Ngs: Transcriptome Analysis, Tuxedo, Galaxy
- Other Tools: Confluence, Git, Jupyter Notebooks, Conda, Copasi, Celldesigner, Stella, Msoffice
- Wetlab: Spectrophotometry, Basic Microbiology And Molecular Biology Techniques, Basic Protein Handling
Languages
Education
Max Planck Institute for Chemical Ecology, Friedrich-Schiller University, Jena
PhD · Jena, Germany
Bioinformatics Centre, University of Pune
Master of Science, Bioinformatics · Bioinformatics · Pune, India
Abasaheb Garware College, University of Pune
Bachelor of Science, Biotechnology · Biotechnology · Pune, India
Certifications & licenses
Data Scientist Bootcamp
University of Sorbonne
Bioinformatics National Certification (BINC)
Statistics
Experience
Global Experience
Expertise
Qualifications
Profile
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