Srividhya (Vidhya) Sainath-PhD Student
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Experience
PhD Student
KatherLab EKFZ for digital health TU Dresden
- Primary Research:
- Developed a compact (<700M parameters) generative vision-language model for whole slide image (WSI) by refining image tokenisation.
- Established an improved evaluation framework, including a curated question-answering dataset and metric selection.
- In preparation for submission.
- Collaboration:
- Conducting research in digital biomarker discovery in computational pathology (CPath) using AI methods.
- Collaborated on projects with international partners, including the Francis Crick Institute (Molecular biomarker prediction in Clear-cell renal carcinoma), HeCOG Greece (Lynch syndrome identification in colorectal carcinoma and Multimodal survival prediction for Prostate adenocarcinoma) and the National Cancer Center Hospital Japan (HIBIRD).
- The work with the Francis Crick Institute is currently being prepared for submission. The collaborative work in Japan has already been published, and the HeCOG projects are ongoing.
- Consortium:
- Manage inter-institutional collaboration and objectives as the KatherLab representative for the LiSYM Consortium.
- Teaching:
- Conducted online workshop sessions for two years at the Clinicum Digitale, educating physicians and medical students on the fundamentals of AI and Python skills.
- Led a multimodal foundation model workshop at the AI in Cancer Research Summer School in Corfu, organized as part of ESAC.
- Presented a talk on vision-language models at the AI in Medicine Summer School, a collaborative event by EKFZ, GENIAL, the TransformLiver Consortium, and ESAC.
Data Manager
KatherLab EKFZ for digital health TU Dresden
- Managed the laboratory's extensive dataset, encompassing multiple terabytes of images, text data, annotations, and omics data stored on the ZIH server.
- Documented existing information and identified public datasets required by the research team (PhDs and Post-Docs).
- Downloaded and preprocessed necessary public datasets for team members.
- Proactively tracked datasets and resolved issues by coordinating with the ZIH service team.
Master Thesis Student
Fraunhofer SCAI
- Master Thesis at Fraunhofer SCAI under the supervision of Prof. Dr. Holger Fröhlich
- "Molecular Stratification of Parkinson's Disease" - Score 1.0
Student Assistant
ZIH TU Dresden
- Enhanced the existing web design implemented using the Django framework by incorporating user feedback received from the project's Gitlab page.
- Implemented & perfected several additional features, including the creation of a User page to display individual user details.
Deputy Manager
WNS (Holdings) Ltd.
- Individual contributor at the Global Organisational Development Team as a Data Analyst handling People analytics projects.
- Shared key benchmarking reports & effectively built and structured various ad-hoc dashboards of ongoing operations (SQLITE, Advanced Excel, and Tableau).
- Performed predictive analysis using Statistical methods such as GLM, PCA, and parametric and non-parametric methods on employee datasets to identify trends in learning, attrition and performance patterns (R).
Data Analyst
Amazon.com
- Performed extensive data analysis on an ongoing basis as per stakeholder requirements. Predominantly used Advanced Excel, SQLite and R to perform analysis and generate reports.
Research Project
BIOTEC TU Dresden
- Research Project at BIOTEC TU Dresden under the supervision of Prof. Dr. Michael Schroeder
- "Unitig-based GWAS on E.coli strains reveal known and potential quinolone-resistance regions." - Score 1,2
Working Student
KPI werk GmbH
- Developed a Python script utilising openCV to automate PDF invoice processing.
- Achieved an 87% accuracy rate in identifying PDF invoices and extracting relevant details.
- Developed and managed the display and outline of Client specific object-handling portal using SAP UI5.
Master Thesis Student
University of Madras
- Master Thesis at University of Madras under the supervision of Dr.P.T.Srinivasan
- "In Silico study of Sirtuin-2 – implicated in Parkinson's Disease"
Industry Experience
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Experienced in Healthcare, Education, Information Technology, Professional Services, Retail, and Biotechnology.
Business Area Experience
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Experienced in Research and Development, Information Technology, Business Intelligence, Human Resources, Project Management, and Operations.
Summary
- Current PhD Student at KatherLab, EKFZ for digital health, TU Dresden
- Masters in Computational Modeling and Simulation - Life Sciences (GPA - 1.5)
- 6+ years of overall work experience with expertise in data processing/analysis technologies: SQL, Python (Pytorch, Tensorflow, Numpy, Pandas), Unix (Shell scripting), R, Tableau
- ~3 years of project management experience with WNS and Amazon on Business Analytics projects
Languages
Education
TU Dresden
Masters · Computational Modeling & Simulation · Germany
University of Madras
Bachelors and Masters · Biochemistry · India
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